Navigating IT Challenges and Opportunities in Healthcare M&A

Updated on April 22, 2025

In the evolving landscape of healthcare, providers have increasingly turned to mergers and acquisitions as a strategy for growth and operational strength. Over the past couple of decades, this trend has surged, driven by a multitude of factors such as the desire to expand services and geographies, increase patient volume, and improve financial strength, cost efficiencies and reductions through volume purchasing and streamlined staffing.

However, when two or more healthcare providers combine to join forces, the impact on IT operations can be significant, causing both challenges and opportunities. Here’s a short breakdown of the potential effects:

IT Operations Impact

IT operations in hospital systems are deeply impacted by M&A activity, given the importance of digital health records, communication systems, cybersecurity, and overall infrastructure in delivering healthcare services. Minimizing the impact to care delivery teams, patient experience, physicians and business operations requires a strategic approach to IT services.

Merging care delivery organizations, whether through a “merger of equals” or an acquisition, is a complex process that comes with numerous challenges. When it comes to merging IT operations, the most successful approaches start with a well-defined and communicated strategic vision that involves a high level of consultation and collaboration with key IT stakeholders. One significant impact of digital transformation is the increasing reliance on well-functioning computer systems for care delivery. When done correctly, the integration of these systems can enhance care quality, boost patient satisfaction, and improve financial performance. 

The key to a successful IT operations merger strategy considers the following challenges and opportunities:

  • Systems Integration and Data Migration: One of the most significant challenges in hospital M&A is integrating different IT systems. Merging two hospital systems with different electronic health record (EHR) platforms, patient management systems, and billing systems requires careful planning, data migration, and significant investments in IT infrastructure. This process can be time-consuming and disruptive, leading to temporary inefficiencies and potential data quality issues.
  • Cybersecurity and Compliance Risks: Integrating hospital systems also introduces increased cybersecurity risks. Different IT infrastructures may have varying levels of security protocols and aligning them to meet healthcare compliance regulations can be a complex task. M&A can make hospital systems more vulnerable to cyberattacks if proper attention isn’t given to aligning security tools and processes. Assessing risks to the organization during a merger or acquisition can be a daunting task without a high degree of maturity in each organization’s technology selection and adoption process. Developing a unified IT Security Plan that includes common cybersecurity protocols, encryption standards, identity and access management processes are important to properly securing the new environment.
  • Technology Upgrades and Standardization: Following an M&A, hospital systems often seek to standardize IT infrastructure and tools across both entities. This could include upgrading to newer technologies, consolidating software platforms, and integrating advanced analytics or artificial intelligence tools. While this can improve efficiency in the long run, it may require significant investment and training for staff, as well as possible disruption during the transition. An accurate and comprehensive inventory of all IT assets during the acquisition process provides the foundation to formulate a strategic IT plan.
  • Operational Disruptions: Operational disruptions during a merger or acquisition can be costly and have both direct and indirect financial impacts. The integration of IT systems often involves scheduled downtime, maintenance, and troubleshooting. This process can lead to temporary disruptions in patient care, particularly in areas like patient scheduling, billing, or medical records access, and others that are heavily dependent on IT infrastructure. Developing comprehensive project plans that include clear communications, systems for business continuance (where possible) and a dependable backout plan are essential to minimize the impact on daily operations. Poorly researched, designed and scoped projects can easily lead to cost overruns in both technology and resources. 
  • Innovation and Future Readiness: Over time, the merged hospital systems can leverage the combined IT resources to innovate and adopt more advanced technology, improving overall patient care, administrative processes, and operational efficiency. For example, the M&A may allow for the development of centralized remote patient monitoring, telemedicine or in-home acute care services. From an IT review and consolidation perspective, the introduction of more sophisticated data analytics for improved efficiencies in patient flow, care delivery, patient outcomes, patient satisfaction and revenue growth.

Hospital system M&A can drive efficiencies and improve service offerings, but the transition period can be challenging for both staffing and IT operations. Effective planning, clear communication, and a focus on integrating both human and technological resources are essential for ensuring the long-term success of the merger or acquisition. Identifying and addressing potential issues early and maintaining a focus on employee support and IT system security can help mitigate many of the risks associated with these changes.

Ken Puffer
Ken Puffer
Chief Technology Officer for Healthcare Solutions at ePlus

Ken Puffer is the Chief Technology Officer for Healthcare solutions at ePlus. In this role, Ken consults with a range of healthcare leaders and technology partners to develop, deploy, optimize, and maintain solutions that help solve the unique challenges facing healthcare. As Chief Technology Officer and Chief Information Security Officer for 20 years at a major healthcare system, Ken brings a comprehensive understanding of the business challenges present when delivering healthcare in a highly competitive environment. Ken's accomplishments include the creation and leadership of the organization’s Help Desk, Desktop Management, Network Operations, Security Operations, Technology Selection and Biomedical Engineering Teams.